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Harrell Miscellaneous

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Contains many functions useful for dataanalysis, high-level graphics, utility operations, functions forcomputing sample size and power, importing and annotating datasets,imputing missing values, advanced table making, variable clustering,character string manipulation, conversion of R objects to LaTeX and html code,and recoding variables.

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Harrell Miscellaneous

  • Continue to refine the summaryX class of functions that replace tables with graphics
    • See also bpplotM and tabulr
  • See https://hbiostat.org/R/Hmisc/summaryFuns.pdf
  • Overall: https://hbiostat.org/R/Hmisc
  • CRAN: http://cran.r-project.org/web/packages/Hmisc
  • Changelog: https://github.com/harrelfe/Hmisc/commits/master
  • Consider using the haven package for importing SAS, Stata, and SPSS files; haven stores labels as the label attribute of each variable as does Hmisc; it converts date and time variables automatically and allows one to specify a format catalog along with the primary dataset
  • See if the readstata13 package has advantages over the foreign package for Stata file import
  • Consider creating xl.get using the readxl package to read .xls and .xlsx Excel files
  • In impute.transcan, sense if a variable in data is not a factor whereas it was treated as a factor during aregImpute; it should be converted to factor before the line v[sub] <- .. levels(as.integer..)) is run

Functions in Hmisc

Name Description
GiniMdGini's Mean Difference
binconfConfidence Intervals for Binomial Probabilities
bootkmBootstrap Kaplan-Meier Estimates
Hmisc-internalInternal Hmisc functions
bpowerPower and Sample Size for Two-Sample Binomial Test
dotchart2Enhanced Dot Chart
bpplotBox-percentile plots
combplotpCombination Plot
SaveFaciliate Use of save and load to Remote Directories
all.is.numericCheck if All Elements in Character Vector are Numeric
bystatsStatistics by Categories
abs.error.predIndexes of Absolute Prediction Error for Linear Models
consolidateElement Merging
biVarBivariate Summaries Computed Separately by a Series of Predictors
aregImputeMultiple Imputation using Additive Regression, Bootstrapping, andPredictive Mean Matching
addMarginalAdd Marginal Observations
dotchart3Enhanced Version of dotchart Function
HmiscOverviewOverview of Hmisc Library
find.matchesFind Close Matches
capitalizecapitalize the first letter of a string
discreteDiscrete Vector tools
first.wordFirst Word in a String or Expression
cpowerPower of Cox/log-rank Two-Sample Test
MiscMiscellaneous Functions
describeConcise Statistical Description of a Vector, Matrix, Data Frame, or Formula
contentsMetadata for a Data Frame
cut2Cut a Numeric Variable into Intervals
data.frame.create.modify.checkTips for Creating, Modifying, and Checking Data Frames
hidingTOCMoving and Hiding Table of Contents
hdquantileHarrell-Davis Distribution-Free Quantile Estimator
event.chartFlexible Event Chart for Time-to-Event Data
escapeRegexEscapes any characters that would have special meaning in a reqular expression.
equalBinsMulticolumn Formating
EcdfEmpirical Cumulative Distribution Plot
CsCharacter strings from unquoted names
ggfreqScatterFrequency Scatterplot
colorFacetMiscellaneous ggplot2 and grid Helper Functions
htmlConvert an S object to HTML
histboxpUse plotly to Draw Stratified Spike Histogram and Box Plot Statistics
format.pvalFormat P Values
gbayesGaussian Bayesian Posterior and Predictive Distributions
curveRepRepresentative Curves
format.dfFormat a Data Frame or Matrix for LaTeX or HTML
legendfunctionsLegend Creation Functions
csv.getRead Comma-Separated Text Data Files
list.treePretty-print the Structure of a Data Object
na.detail.responseDetailed Response Variable Information
dataRepRepresentativeness of Observations in a Data Set
imputeGeneric Functions and Methods for Imputation
na.deleteRow-wise Deletion na.action
hoeffdMatrix of Hoeffding's D Statistics
num.interceptsExtract number of intercepts
partitionPatitions an object into different sets
getHdataDownload and Install Datasets for Hmisc, rms, and Statistical Modeling
mgp.axisDraw Axes With Side-Specific mgp Parameters
panel.bpplotBox-Percentile Panel Function for Trellis
labelLabel Attribute of an Object
minor.tickMinor Tick Marks
errbarPlot Error Bars
latexConvert an S object to LaTeX, and Related Utilities
knitrSetknitr Setup and plotly Service Function
deffDesign Effect and Intra-cluster Correlation
event.convertEvent Conversion for Time-to-Event Data
labcurveLabel Curves, Make Keys, and Interactively Draw Points and Curves
hist.data.frameHistograms for Variables in a Data Frame
histbackbackBack to Back Histograms
mtitleMargin Titles
event.historyProduces event.history graph for survival data
reShapeReshape Matrices and Serial Data
multLinesPlot Multiple Lines
getRsInteract with github rscripts Project
getZipOpen a Zip File From a URL
cnvrt.coordsConvert between the 5 different coordinate sytems on a graphical device
aregAdditive Regression with Optimal Transformations on Both Sides usingCanonical Variates
approxExtrapLinear Extrapolation
ciapowerPower of Interaction Test for Exponential Survival
mhgrMiscellaneous Functions for Epidemiology
plsmoPlot smoothed estimates
latexCheckOptionsCheck whether the options for latex functions have been specified.
pc1First Principal Component
dotchartplEnhanced Version of dotchart Function for plotly
rcorrp.censRank Correlation for Paired Predictors with a Possibly Censored Response, and Integrated Discrimination Index
mApplyApply a Function to Rows of a Matrix or Vector
latexDotchartEnhanced Dot Chart for LaTeX Picture Environment with epic
print.char.listprints a list of lists in a visually readable format.
mdb.getRead Tables in a Microsoft Access Database
makeNstrcreates a string that is a repeat of a substring
popowerPower and Sample Size for Ordinal Response
latexTabularConvert a Data Frame or Matrix to a LaTeX Tabular
samplesize.binSample Size for 2-sample Binomial
sasxport.getEnhanced Importing of SAS Transport Files using read.xport
latexThermCreate LaTeX Thermometers and Colored Needles
mChoiceMethods for Storing and Analyzing Multiple Choice Variables
rcspline.evalRestricted Cubic Spline Design Matrix
transaceAdditive Regression and Transformations using ace or avas
transcanTransformations/Imputations using Canonical Variates
stat_plsmoAdd a lowess smoother without counfidence bands.
score.binaryScore a Series of Binary Variables
srcSource a File from the Current Working Directory
scat1dOne-Dimensional Scatter Diagram, Spike Histogram, or Density
redunRedundancy Analysis
simplifyDimsList Simplification
summarizeSummarize Scalars or Matrices by Cross-Classification
summary.formulaSummarize Data for Making Tables and Plots
nobsYCompute Number of Observations for Left Hand Side of Formula
smean.sdCompute Summary Statistics on a Vector
subplotEmbed a new plot within an existing plot
tabulrInterface to Tabular Function
summaryMSummarize Mixed Data Types vs. Groups
prnzPrint and Object with its Name
rcorrMatrix of Correlations and P-values
nstrCreates a string of arbitry length
prselectSelectively Print Lines of a Text Vector
sysRun Unix or Dos Depending on System
t.test.clustert-test for Clustered Data
ynbindCombine Variables in a Matrix
xtfrm.labelledAuxiliary Function Method for Sorting and Ranking
texfunction for use in graphs that are used with the psfrag package in LaTeX
xYplotxyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
plotCorrPrecisionPlot Precision of Estimate of Pearson Correlation Coefficient
%nin%Find Matching (or Non-Matching) Elements
plotlyMplotly Multiple
rcorr.censRank Correlation for Censored Data
na.keepDo-nothing na.action
rlegendSpecial Version of legend for R
spowerSimulate Power of 2-Sample Test for Survival under Complex Conditions
rm.bootBootstrap Repeated Measurements Model
print.char.matrixFunction to print a matrix with stacked cells
rcspline.plotPlot Restricted Cubic Spline Function
trunc.POSIXtReturn the floor, ceiling, or rounded value of date or time to specified unit.
translateTranslate Vector or Matrix of Text Strings
summaryRcGraphical Summarization of Continuous Variables Against a Response
summaryPMulti-way Summary of Proportions
spss.getEnhanced Importing of SPSS Files
rcspline.restateRe-state Restricted Cubic Spline Function
showPsfragDisplay image from psfrag LaTeX strings
simRegOrdSimulate Power for Adjusted Ordinal Regression Two-Sample Test
stata.getEnhanced Importing of STATA Files
rMultinomGenerate Multinomial Random Variables with Varying Probabilities
pstampDate/Time/Directory Stamp the Current Plot
string.bounding.boxDetermine Dimensions of Strings
seditCharacter String Editing and Miscellaneous Character Handling Functions
xy.groupMean x vs. function of y in groups of x
yearDaysGet Number of Days in Year or Month
varclusVariable Clustering
wtd.statsWeighted Statistical Estimates
summarySSummarize Multiple Response Variables and Make Multipanel Scatter or Dot Plot
symbol.freqGraphic Representation of a Frequency Table
show.pchDisplay Colors, Plotting Symbols, and Symbol Numeric Equivalents
upDataUpdate a Data Frame or Cleanup a Data Frame after Importing
unitsUnits Attribute of a Vector
somers2Somers' Dxy Rank Correlation
solvetsolve Function with tol argument
string.break.lineBreak a String into Many Lines at Newlines
upFirstChange First Letters to Upper Case
stringDimsString Dimentions
valueTagsStore Discriptive Information About an Object
LagLag a Numeric, Character, or Factor Vector
MergeMerge Multiple Data Frames or Data Tables
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Generalhoslem Package R Download Mac Free

LicenseGPL (>= 2)
URLhttps://hbiostat.org/R/Hmisc/, https://github.com/harrelfe/Hmisc/
Packaged2020-08-10 12:34:23 UTC; harrelfe
Date/Publication2020-08-10 22:02:11 UTC

Generalhoslem Package R Download Mac Os

Generalhoslem Package R Download Mac

Generalhoslem Package R Download Mac Torrent

suggests acepack , chron , knitr , mice , plotly (>= 4.5.6) , plyr , rlang , rms , tables
imports base64enc , cluster , data.table , foreign , grid , gridExtra , gtable , htmlTable (>= 1.11.0) , htmltools , latticeExtra , methods , nnet , rpart , viridis
depends Formula , ggplot2 (>= 2.2) , lattice , survival (>= 3.1-6)
ContributorsFrank Harrell Jr

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